List of Libraries/Source Code

10. List of Libraries/Source Code#

Table 10.1 Source codes of BrainKB Microservices#
Title	Link	Description
BrainKB	sensein/BrainKB	Source code for different microservice components of BrainKB.
BrainKB UI	sensein/brainkb-ui	Source code for the BrainKB user interface (https://beta.brainkb.org).
ProvSense	pypi.org/project/ProvSense	A Python library for comparing changes in KGs.
GrobidArticleExtractor	pypi.org/project/GrobidArticleExtractor	A Python library designed to extract and organize content from scientific papers in PDF format.
EviSense	pypi.org/project/EviSense	A Python library to extract evidence and rationales for specific terms within documents, including scientific publications. It supports multiple LLM providers (e.g., Ollama and OpenRouter) and allows the use of multiple models for greater flexibility. See the example for a demonstration of how to use it.
SchemaExtractor	sensein/SchemaExtractor	A Python library for extracting and analyzing schemas from knowledge graphs, leveraging llm-based multi-agent autonomous systems for efficient processing and analysis.

Title	Link	Description
Assertion Evidence Schema	models/index_assertion_evidence	A schema designed to capture assertions, supporting evidence, and provenance information from scientific publications.

Table 10.2 Additional Software and Libraries Developed for BrainKB#
Title	Link	Description
FastApi Skeleton	sensein/fastapi-skeleton	The generic FastAPI skeleton with logging, authentication, and containerization features can be used in any other project.
JWT User & Scope Manager	sensein/BrainKB	Web-based tool for simplified user and permission management using JWT tokens, optimized for FastAPI but versatile for any framework.